Hiruna Samarakoon

Hiruna

Full Name

Hiruna Samarakoon

Preferred Name

Hiruna Samarakoon

Registration Number

E/14/302

Department

Computer Engineering

e14302@ce.pdn.ac.lk

Publications

Genopo: a nanopore sequencing analysis toolkit for portable Android devices

Hiruna Samarakoon , Sanoj Punchihewa , Anjana Senanayake, Jillian M. Hammond, Igor Stevanovski, James M. Ferguson, Roshan Ragel , Hasindu Gamaarachchi, Ira W. Deveson
Communications Biology, 2020
doi: 10.1038/s42003-020-01270-z

[ PDF ]

#Genopo#Nanopore Sequencing
GPU accelerated adaptive banded event alignment for rapid comparative nanopore signal analysis

Hasindu Gamaarachchi, Chun Wai Lam, Gihan Jayatilaka , Hiruna Samarakoon , Jared T. Simpson, Martin A. Smith, Sri Parameswaran
BMC Bioinformatics, 2020
doi: 10.1186/s12859-020-03697-x

[ PDF ][ PDF (Preprint) ][ Codebase ]

#Nanopore#Signal alignment#Event alignment#Methylation#GPU#GPU acceleration#Optimisation#SoC#Nanopolish#f5c
Chloroplast genome, nuclear ITS regions, mitogenome regions, and Skmer analysis resolved the genetic relationship among Cinnamomum species in Sri Lanka

Pradeepa CG Bandaranayake, Nathasha Naranpanawa, CHWMR Bhagya Chandrasekara, Hiruna Samarakoon , S Lokuge , S Jayasundara , Asitha U Bandaranayake , DKNG Pushpakumara, D Siril A Wijesundara
PLOS One, 2023
doi: 10.1371/journal.pone.0291763

[ PDF ]

Please note that here only contain the 'Publications' affiliated with the Department of Computer Engineering. To see the full publication profile, visit the ResearchGate or Google Scholar profile of the student.